By P.C. van der Vliet (Eds.)

The crucial function of RNA in lots of mobile methods, in biotechnology, and as pharmaceutical brokers, has created an curiosity in experimental equipment utilized to RNA molecules. This booklet offers scientists with a accomplished selection of completely demonstrated updated manuals for investigating RNA-protein complexes in vitro. The protocols may be played via researchers proficient in general molecular organic thoughts and require not less than really expert gear. The approaches comprise suggestion of providers of reagents.

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Extra info for Analysis of RNA-Protein Complexes in vitro

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Trace amounts of [ c u - ~ ~NTP, be included in the preparative RNA synthesis in order to quantify the final yield. e. The DNA template may precipitate if 10 x polymerase buffer is added directly. f. rNTPs in the preparative reaction mix may be raised to 5mM final concentration resulting in a higher yield. g g. The free [MgZ+]must be adjusted depending on the nucleotide concentration. Since each nucleotide chelates one Mg2+ ion a rule of thumb is: The [Mg2+]should exceed the total nucleotide concentration by approximately 4 mM.

1% antifoam A. b. Do not use neutralised phenol. c. The volume is unlikely to exceed 1ml. d. The ethanol precipitation step is introduced to remove traces of guanidinium thiocyanate. Comments Since the guanidinium thiocyanate acid-phenol method can process Ch. 2 PREPARATION OF R N A 25 a large number of samples on a small scale, several manufacturers base their total RNA isolation kits on this method. Therefore, efforts have been directed towards simplifying the original procedure. The major short-cut is to incorporate phenol in the lysis solution, but the kit protocols tend to stick with the original ratio of 1ml lysis solution per 100 mg tissue or lo7 cells.

8. Heat inactivate at 95°C for 4 mins-then on ice. 9. 0. 10. " 11. Extract 2 X with chloroform. 12. 5 vol EtOH. 13. Precipitate and wash with 70% EtOH. Notes a. The heat inactivation does not completely inactivate the phosphatase. Comments The dephosphorylation of in vitro transcribed RNA can be avoided if a diribonucleotides, such as CpG, ApG or UpG is included in the transcription mixture. 2). Ch. 2. 0 [y-”PI ATP (3000 Ci/mmol, 10 pCi/pl) Procedure 1. 5-5 p,g dephosphorylated RNA in 10 p,l HzO.

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